Laboratory of Bioinformatics

dr Anna Philips

Dr. Anna Philips

Head of Laboratory

aphilips@ibch.poznan.pl
ext. ​1647

Research Projects

Keywords
  • NGS
  • WGS
  • RNA-seq
  • DE
  • Metagenomics
  • Transcriptomics
  • SNP
  • CNV
  • PCA
  • Docking
  • Structure Modeling

Offer

NGS:

  • Analysis of differential gene expression
  • Analysis of differential expression of transcripts (alternative splicing)
  • Assembly of transcriptomes ab initio (based on genome) and de novo (without genome sequence) and their annotation
  • Identification of new genes and splicing forms
  • Analysis of non-coding RNAs (miRNA, piRNA, circRNA ect.)
  • Identification of miRNA target sequences
  • SNP identification
  • CNV identification
  • Analysis of WGS, exons (Exome-Seq) and selected genes (targeted sequencing)
  • De novo assembly of genomes and their annotation
  • Metagenomics analyses

Structure modeling:

  • Modeling 3D structures of proteins and nucleic acids; introducing modifications,
  • Thermodynamic analyzes
  • Docking of ligands to proteins / RNA
  • RNA structure prediction from NGS data

Other:

  • Data mining
  • Statistical analyses
  • Analysis of biological data in Python and Bioconductor (R language)
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